Table of ContentsView AllTable of ContentsHealthy MicrobiomeSupporting the MicrobiomeGut Health Importance

Table of ContentsView All

View All

Table of Contents

Healthy Microbiome

Supporting the Microbiome

Gut Health Importance

The gutmicrobiomerefers to all the microorganisms living in the digestive system. The microbiome is individual to each person and is important todigestive healthas well as to overall health.

Studies of the gut microbiome are ongoing, but it’s becoming clear that certain types of bacteria, yeast, and other fungi are more or less beneficial for overall health. People may be able to affect their microbiome with diet and other lifestyle factors.

This article will cover the microbiome in a broad sense, including how the diversity of microorganisms in it may affect overall health.

SeventyFour / Getty Images

Person frying an egg at home

What’s Considered a “Healthy” Microbiome?

What is “healthy” in thegut microbiomeis not yet well understood. For instance, there’s no master list of different types of bacteria and in what proportion everyone should have to be healthy.

What is known is that the composition and diversity in the gut microbiome do have an effect on health. Composition takes into consideration which microbes are in the gut and in what numbers. Diversity refers to the idea of having many different types of species of microbes.

Dysbiosisrefers to a shift in the microbiome to less diverse or less favorable to overall health. Many things can lead to dysbiosis, including receiving antibiotics, having an infection, and dietary changes.

The gut microbiome protects the body in various ways. It’s not yet known exactly how the makeup of one person’s microbiome may affect their health. However, some broad generalizations can be made about how diet and other environmental factors may shift the microbiome in one direction or another.

19 Foods That Help Digestion: What to Eat and Avoid

Ways to Support Your Microbiome

Evaluate Your Diet

Diet, starting with that of the birthing person for an infant, is an important factor in the gut microbiome. In general, a diet that contains many differenttypes of foods—especially plants, including fruits, nuts, and vegetables—supports a diverse gut microbiome.

One 2021 study showed that gut microbiome diversity was increased in people who ate certain foods. Not every possible food was included in the results of the study, however.

Foods associated with having a more diverse microbiome include:

Foods associated with a less diverse microbiome included:

The authors point out that there’s room for nuance. The quality, source, and type of a food are all important in considering if it will promote a diverse gut microbiome. For instance, plant-based foods that are ultra-processed may not have the same benefit for the microbiome as a whole fruit or vegetable.

Research isn’t at the point in which all the parts of the human diet can be pinned down to how they affect the microbiome. Further, there’s not enough evidence to tell everyone exactly what they should eat to support their microbiome. Much of the research is still being done on mice, and that doesn’t always directly translate to what may happen in humans.

Any broad dietary advice needs to be viewed as being just that—not specific to any one person. That doesn’t mean it might not be helpful, but it may not provide all the information needed.

The best approach is to work with a healthcare provider to make a dietary plan that takes the whole person into account. This includes culture and food preferences since a diet plan is no good if a person isn’t going to follow it.

Beneficial Foods

With all those caveats taken into account, there may be some items that, when added to the diet, can shift the microbiome in the direction of more diversity. This can include:

Foods That May Be Detrimental

There is no single list of foods that are worsen the gut microbiome for everyone. However, a diet that includes higher amounts of these foods may decrease the number of bacteria in the microbiome and their diversity, such as:

In one study, agluten-free diet(a diet containing no gluten, a protein found in certain grains like wheat, barley, and rye), a Western diet (a diet high in animal protein and fat and low in fiber), and a high protein/low carbohydrate diet were associated with a decrease in bacteria considered more helpful and an increase in bacteria considered less helpful.

ProbioticsProbiotics are live bacteria. They’re found in foods and are also available in supplements. It’s thought that eating probiotics may help in diversifying and strengthening the gut microbiome.However, eating probiotics in foods can present some issues, especially if those foods contain additives that are thought to be less helpful in feeding the gut microbiome. Artificial sweeteners and sugars, for example, are common in yogurts, which is a food that naturally contains probiotics.It’s important to read food labels carefully to understand the full picture of a food. A food may naturally contain probiotics, or it may have probiotics added to it, but it also may contain many other substances. Looking for whole foods or minimally processed foods that have fewer ingredients and don’t have added sugars, sugar substitutes, or artificial colors or flavorings, may be helpful.

Probiotics

Probiotics are live bacteria. They’re found in foods and are also available in supplements. It’s thought that eating probiotics may help in diversifying and strengthening the gut microbiome.However, eating probiotics in foods can present some issues, especially if those foods contain additives that are thought to be less helpful in feeding the gut microbiome. Artificial sweeteners and sugars, for example, are common in yogurts, which is a food that naturally contains probiotics.It’s important to read food labels carefully to understand the full picture of a food. A food may naturally contain probiotics, or it may have probiotics added to it, but it also may contain many other substances. Looking for whole foods or minimally processed foods that have fewer ingredients and don’t have added sugars, sugar substitutes, or artificial colors or flavorings, may be helpful.

Probiotics are live bacteria. They’re found in foods and are also available in supplements. It’s thought that eating probiotics may help in diversifying and strengthening the gut microbiome.

However, eating probiotics in foods can present some issues, especially if those foods contain additives that are thought to be less helpful in feeding the gut microbiome. Artificial sweeteners and sugars, for example, are common in yogurts, which is a food that naturally contains probiotics.

It’s important to read food labels carefully to understand the full picture of a food. A food may naturally contain probiotics, or it may have probiotics added to it, but it also may contain many other substances. Looking for whole foods or minimally processed foods that have fewer ingredients and don’t have added sugars, sugar substitutes, or artificial colors or flavorings, may be helpful.

Mastic Gum: How Does It Benefit Gut Health?

Manage Stress

You may not think of stress as something that can affect the gut microbiome. However, it has been shown that psychological stress (as opposed to physical stress) may interfere with the microbiome. The research has mostly been done on animals (such as mice). This is called preclinical data because it has not yet been tested in many well-executed studies in humans.

The gut microbiome can be shifted, but it is also fairly elastic. It tends to go back to what it was before the disruption. Chronic stress, however, may change the microbiome long enough to lose some of that stability.

Chronic stressmay also trigger the immune system. This could lead to dysbiosis, although what it means for overall health isn’t yet well understood. It’s possible that the disruption from stress could result in a long-term change that affects the risk of developing or worsening other illnesses.

For that reason, managing stress may help keep the gut microbiome in balance. “Stress reduction” is a broad term. There are many ways to reduce stress, and what is helpful will differ from person to person.

Stress ReductionEveryone experiences stress in one form or another. Techniquesto relieve stressinclude mindfulness, meditation, breathwork, aromatherapy, yoga, or art therapy. Talk therapy, cognitive behavioral therapy (a type of talk therapy), and other therapy tools might also be helpful for certain people.It’s important to think of stress management as a process rather than a goal. Trying different options can help find the ones that help make a difference.

Stress Reduction

Everyone experiences stress in one form or another. Techniquesto relieve stressinclude mindfulness, meditation, breathwork, aromatherapy, yoga, or art therapy. Talk therapy, cognitive behavioral therapy (a type of talk therapy), and other therapy tools might also be helpful for certain people.It’s important to think of stress management as a process rather than a goal. Trying different options can help find the ones that help make a difference.

Everyone experiences stress in one form or another. Techniquesto relieve stressinclude mindfulness, meditation, breathwork, aromatherapy, yoga, or art therapy. Talk therapy, cognitive behavioral therapy (a type of talk therapy), and other therapy tools might also be helpful for certain people.

It’s important to think of stress management as a process rather than a goal. Trying different options can help find the ones that help make a difference.

What’s the Gut Microbiome Got to Do With Depression?

The Importance of Gut Health

The study of the gut microbiome is still in the early stages. Much of the research is on animals or computer models rather than humans. That doesn’t mean nothing has been learned, but rather that it is not proven. Humans are complex. The gut microbiome (with its trillions of organisms) is intimately involved in health.

Diet, psychological stress, and environmental exposures can all affect the gut microbiome. They can shift it into helpful or unhelpful directions. It is not yet known how individuals can affect the microbiome to get the results they are looking for, such as a lowered risk of certain diseases.

However, it is known that the makeup of the gut microbiome may affect many disease processes. For example, certain microbiome “signatures” have been associated with the potential for the development ofcirrhosis(liver scarring) anddiabetes.

Therefore, it’s important to be mindful of your gut microbiome. Science is not yet at the level ofpersonalized medicinein knowing how to make the most of your own microbiome or how to change it beneficially.

However, enough is known that you can gain some benefit from including more of certain foods in your diet (and less of others), reducing stress, and doing what you can to avoid infections or obvious environmental toxins like heavy metals.

Proper Hand Washing Technique

Immune Function

The gut microbiome may “learn," over time, how to respond to the substances it comes into contact with. Not only foods and medicines but also other things that get into your body, like pollen or bacteria in the environment that may cause disease.

The immune system might react in a way that clears the things that may do harm. Or it may overreact, doing too much, such as mounting anallergic reactionto a food or other substance.

Researchers don’t yet understand how to shift the microbiome so that it helps the immune system to react appropriately in all cases. Keeping the gut microbiome in balance and supporting it in the ways identified may be helpful in keeping the immune system working well.

Gut-Brain Axis

The gut-brain axis is the connection between the gut microbiome and the brain (the central nervous system). It’s thought that the diversity and makeup of the gut microbiome may have an effect on the brain, including the development of neurological disorders.

It’s also thought to work in the other direction, with the brain having an effect on the gut microbiome. For this reason, some digestive conditions, such asirritable bowel syndrome (IBS), are now being thought of as disorders of the gut-brain interaction.

Summary

The gut microbiome is the community of bacteria, yeast, and fungi in the digestive system. There are many unanswered questions about the gut microbiome, but it is clear that it has a significant effect on overall health.

Keeping the microbiome in balance is a subject of study, but it is not yet well understood as to how to achieve a beneficial mix of microorganisms. Dietary changes, stress reduction, and avoidance of things that may disrupt the gut microbiome may be able to change the composition.

11 Sources

Verywell Health uses only high-quality sources, including peer-reviewed studies, to support the facts within our articles. Read oureditorial processto learn more about how we fact-check and keep our content accurate, reliable, and trustworthy.

Gritz EC, Bhandari V.The human neonatal gut microbiome: a brief review.Front Pediatr.2015;3:17. doi:10.3389/fped.2015.00017

Paglia L.From native core micriobiome to milk-oriented microbiome.Eur J Paediatr Dent.2021;22:89. doi:10.23804/ejpd.2021.22.02.1

Asnicar F, Berry SE, Valdes AM, et al.Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals.Nat Med. 2021;27:321-332. doi:10.1038/s41591-020-01183-8

Singh RK, Chang HW, Yan D, et al.Influence of diet on the gut microbiome and implications for human health.J Transl Med. 2017;15:73. doi:10.1186/s12967-017-1175-y

Su G, Ko C, Bercik P, et al.AGA clinical practice guidelines on the role of probiotics in the management of gastrointestinal disorders.Gastroenterology. 2020;159:697-705. doi:10.1053/j.gastro.2020.05.059.

Osadchiy V, Martin CR, Mayer EA.The gut-brain axis and the microbiome: mechanisms and clinical implications.Clin Gastroenterol Hepatol. 2019;17:322-332. doi:10.1016/j.cgh.2018.10.002

Dickson I.Microbiome signatures for cirrhosis and diabetes.Nat Rev Gastroenterol Hepatol.2020;17:532. doi:10.1038/s41575-020-0351-3

Bull MJ, Plummer NT.Part 1: the human gut microbiome in health and disease.Integr Med (Encinitas). 2014;13:17-22.

Michigan Medicine.Irritable bowel syndrome (IBS) and disorders of gut-brain interaction.

Meet Our Medical Expert Board

Share Feedback

Was this page helpful?Thanks for your feedback!What is your feedback?OtherHelpfulReport an ErrorSubmit

Was this page helpful?

Thanks for your feedback!

What is your feedback?OtherHelpfulReport an ErrorSubmit

What is your feedback?